PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004509816.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 398aa    MW: 45560.2 Da    PI: 6.6457
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004509816.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.63.1e-15217260755
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       Er+RR+riN+++++Lr+l+P+      +K++ a+iLe A+eYIk+Lq
  XP_004509816.1 217 VTERNRRKRINKGLFTLRSLVPNI-----TKMDRAAILEDAIEYIKELQ 260
                     57*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.1E-1510151IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.783210259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-16212274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.22E-14213263No hitNo description
SMARTSM003533.0E-15216265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-13217260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-16217274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00324333395No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MSGMRVVEWL RPLVETKAWD YVVVWKYGND PTRFIEWMGC CCGGGNIEHV KFEEKMDDEQ  60
YNLGPICRDT LFYHPVRTKS CEALAKFPFS ISLYSSVHGE VAISQQPRWL IQQDSIGTQV  120
LIPIFGGLVE LFTANLIPKD INMMEFISAH FCVSINQEAI SEQSYTNRNF NDHYTLTPSI  180
EGLSSGSNPS TEHSKGEDKE KLVREPQKEV YHAKNLVTER NRRKRINKGL FTLRSLVPNI  240
TKMDRAAILE DAIEYIKELQ KQEIKLQEEV KALEVEDCEK NTLQLRVKTE KEQAKGTRSL  300
PLIELNQSSS DSTRKTKMKL QVEVNHIGGT EFLIKLCCEQ KKGGFSRLME AIHSFGLHVV  360
HANMITFDGI VSNNLMVEAT EQDIHPMKLR EYLIQQTG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004509816.10.0PREDICTED: transcription factor ABORTED MICROSPORES isoform X1
TrEMBLA0A072U2K10.0A0A072U2K1_MEDTR; BHLH transcription factor
STRINGGLYMA08G39470.21e-166(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122653033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.14e-64bHLH family protein